PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60112.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SBP

Protein Properties

Length: 137aa MW: 15126.2 Da PI: 10.4774

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60112.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	6.8e-41	52	129	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC+ dl++akeyhr+hkvCe+hsk+++v++ gle+rfCqqCsrfh+lsefD+ krsCrrrL +hn+rrrk+q+ EPS60112.1 52 RCVVEGCSLDLTTAKEYHRKHKVCEAHSKCSKVILGGLERRFCQQCSRFHSLSEFDDMKRSCRRRLMDHNARRRKPQP 129 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-31	50	114	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.445	50	127	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-38	51	132	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.2E-30	53	126	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010358	Biological Process	leaf shaping
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
SAEQLIGLKL GKRTYFENTG GGGSSSSAAA KPGGPSSSSH RPSKATCRLV PRCVVEGCSL 60 DLTTAKEYHR KHKVCEAHSK CSKVILGGLE RRFCQQCSRF HSLSEFDDMK RSCRRRLMDH 120 NARRRKPQPE TAFSSSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	53	126	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086806.1	7e-57	squamosa promoter-binding-like protein 12
Refseq	XP_011086808.1	7e-57	squamosa promoter-binding-like protein 12
Refseq	XP_020551644.1	7e-57	squamosa promoter-binding-like protein 12
Swissprot	A2X0Q6	6e-49	SPL3_ORYSI; Squamosa promoter-binding-like protein 3
Swissprot	A3A2Z8	6e-49	SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBL	S8DKR8	6e-95	S8DKR8_9LAMI; Uncharacterized protein (Fragment)
STRING	VIT_01s0010g03710.t01	3e-52	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4129	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	5e-44	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]