PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59989.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 216aa    MW: 24377 Da    PI: 9.8658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59989.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-142879155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  EPS59989.1 28 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAPRGDQASIVGGAINFVKELE 79
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-132683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-112683No hitNo description
PROSITE profilePS5088815.4662778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-172796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-112879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-93384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
PPPQPPPLKT RKRRRAQSCK NKEEMETQRM THIAVERNRR RQMNDYLAVL RSLMPPSYAP  60
RGDQASIVGG AINFVKELEQ LVQFLEAKKS SYQLRRDAAE AFSKFFNFPQ YTTRPAADEA  120
PSGTDGGERQ RSIVADVEVS MVEGHASIKI LSERRPKQLL KLVAGLHSFR LPVLHVNVTS  180
ADQSVLYTFS VKVEDECLFS TVHEIATAVH DMMGLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713LKTRKRR
21014RKRRR
32839RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100183.26e-94LOW QUALITY PROTEIN: transcription factor bHLH96-like
SwissprotQ9C7T45e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLS8C0241e-159S8C024_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc11g010340.1.15e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]