PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | NF-YC | ||||||||
Protein Properties | Length: 112aa MW: 12790 Da PI: 10.8582 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.9 | 6.2e-15 | 3 | 78 | 23 | 97 |
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + r+kki+k d+d+++i +ea l+s + elf+ l+ rs a e+k+rt++ d+ +av+r + dfl+d p EPS59982.1 3 VGRVKKIVKLDKDISRINSEAMFLISSSTELFLQFLAERSAQVAMEKKKRTVRIGDLREAVKRHRpTADFLLDCLP 78 78***********************************************************9975489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.55E-16 | 2 | 89 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.7E-18 | 3 | 78 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-13 | 4 | 63 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
ISVGRVKKIV KLDKDISRIN SEAMFLISSS TELFLQFLAE RSAQVAMEKK KRTVRIGDLR 60 EAVKRHRPTA DFLLDCLPMP PPPSDKNTHK DRSKVTAPPS FYTKSIDAFF RK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851147.1 | 9e-45 | PREDICTED: nuclear transcription factor Y subunit gamma | ||||
TrEMBL | S8DKF7 | 4e-75 | S8DKF7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K00728.1.p | 3e-44 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11435 | 24 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 2e-38 | nuclear factor Y, subunit C13 |
Publications ? help Back to Top | |||
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