PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | DBB | ||||||||
Protein Properties | Length: 114aa MW: 12744.4 Da PI: 6.9404 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.4 | 9.4e-06 | 8 | 49 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e + +C+++ lC +C ++ H+ H+++ EPS59748.1 8 LCEYCGERRSVVYCRSDMAGLCLSCDSKVHSAnalsrrHSRT 49 5*****************************657777778765 PP | |||||||
2 | zf-B_box | 22.4 | 2.5e-07 | 50 | 93 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C+++ ++++ C d + lC++C eH++ Ht++ EPS59748.1 50 LICERCASQPAFVRCIDERATLCQSCDWMEHHQgasssppHTRE 93 69************************999954449999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.7E-9 | 4 | 51 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.13E-5 | 8 | 51 | No hit | No description |
PROSITE profile | PS50119 | 9.186 | 8 | 51 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.83 | 47 | 95 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
SAEVMGYLCE YCGERRSVVY CRSDMAGLCL SCDSKVHSAN ALSRRHSRTL ICERCASQPA 60 FVRCIDERAT LCQSCDWMEH HQGASSSPPH TREAVCWYSS CPSASELSSI WPFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085424.1 | 3e-50 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100551.1 | 2e-50 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100552.1 | 2e-50 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100553.1 | 2e-50 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020551824.1 | 3e-50 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020551825.1 | 3e-50 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 5e-45 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | S8DAM2 | 4e-77 | S8DAM2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M00064.1.p | 1e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 2e-47 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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