PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB_related | ||||||||
Protein Properties | Length: 168aa MW: 19164.6 Da PI: 9.8088 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.7e-14 | 17 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++ E++++v+a k++G W+ I +++ ++t+ q++s+ qk+ EPS59701.1 17 RERWSEAEHLRFVEALKLYGRS-WRQIEEHVA-TKTAIQIRSHAQKF 61 78******************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.64E-15 | 11 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.077 | 12 | 66 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.4E-16 | 15 | 64 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.8E-11 | 16 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 17 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-11 | 17 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-8 | 19 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MGSDSKVRKP YTITKQRERW SEAEHLRFVE ALKLYGRSWR QIEEHVATKT AIQIRSHAQK 60 FFAKVTRDSG VCRGEWSLNP DDIPPPRPKK KPVHPYPRKR SSSSAKEVEN VSFLDGDDNK 120 YSPSSVLSPL ASSDNLDVDK NSPNTDDLFA RIPSPDDKFA TVIIIIHY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020548212.1 | 2e-42 | protein REVEILLE 7-like isoform X1 | ||||
Refseq | XP_020548213.1 | 2e-42 | protein REVEILLE 7-like isoform X1 | ||||
Refseq | XP_020548214.1 | 2e-42 | protein REVEILLE 7-like isoform X1 | ||||
Refseq | XP_020548215.1 | 2e-42 | protein REVEILLE 7-like isoform X2 | ||||
Swissprot | F4K5X6 | 7e-42 | RVE2_ARATH; Protein REVEILLE 2 | ||||
TrEMBL | S8C5I1 | 1e-120 | S8C5I1_9LAMI; Uncharacterized protein | ||||
STRING | Bra039503.1-P | 3e-41 | (Brassica rapa) | ||||
STRING | Migut.O00255.1.p | 3e-41 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7447 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 9e-36 | MYB_related family protein |
Publications ? help Back to Top | |||
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