PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59618.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family Whirly
Protein Properties Length: 161aa    MW: 17922.6 Da    PI: 10.1075
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59618.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1799.7e-5681452138
      Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100
                 ++k+kaal+ +   p +++l+ g  ++kr+G ++l+l +a++erkydWek+q+fals+ ev+++++l+sk+sceffhdp++k+sneGkvrk+l+++ + 
  EPS59618.1   8 IFKGKAALSAQMLSPRLSKLENGDYRVKRPGVIMLTLWPAIGERKYDWEKRQQFALSVNEVGSVISLGSKQSCEFFHDPSMKSSNEGKVRKSLSIKLHD 106
                 9************************************************************************************************** PP

      Whirly 101 dGs.GlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                 dGs  +f++lsv ns++k+ +++svPv+ +efavlr ++
  EPS59618.1 107 DGSgCYFISLSVANSVLKTSDRLSVPVAASEFAVLRAAF 145
                 ***669******************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.3E-651160IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.51E-571159IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-538143IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
RVFAPYTIFK GKAALSAQML SPRLSKLENG DYRVKRPGVI MLTLWPAIGE RKYDWEKRQQ  60
FALSVNEVGS VISLGSKQSC EFFHDPSMKS SNEGKVRKSL SIKLHDDGSG CYFISLSVAN  120
SVLKTSDRLS VPVAASEFAV LRAAFTFALP QLLGWDQFNN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A4e-76116110169StWhy2
3n1i_A4e-76116110169protein StWhy2
3n1j_A4e-76116110169Protein StWhy2
3n1k_A4e-76116110169protein StWhy2
3n1l_A4e-76116110169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095185.18e-83single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2
SwissprotD9J0341e-74WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLS8DAA31e-115S8DAA3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.C01402.1.p1e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-73WHIRLY 2
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]