PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25019.2 Da PI: 9.6441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g+W+++++ g++R+ k+c++rw +yl EPS59550.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPSNTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 8.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ +v++ +lG++ W++Ia++++ Rt++++k++w+++l EPS59550.1 67 RGSFTDHEEKMIVQLQGLLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.553 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.56E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.696 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.70E-10 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PSNTGLRRCS KSCRLRWTNY 60 LRPGIKRGSF TDHEEKMIVQ LQGLLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLQ 120 SGDSCLSGAG ELFPAMLSKG QWERRLQTDI STAKQALHDA LSSETADKSF AGATPYASST 180 ENIARLLKQW MNEKPNSHNN NNNKSQCSSS TSNNRTAVDS SCSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-27 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 5e-27 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00395 | DAP | Transfer from AT3G47600 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098622.1 | 1e-111 | myb-related protein 306 | ||||
Swissprot | P81392 | 7e-99 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | S8BY73 | 1e-167 | S8BY73_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009629125.1 | 1e-104 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 9e-98 | myb domain protein 94 |
Publications ? help Back to Top | |||
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