PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ERF | ||||||||
Protein Properties | Length: 147aa MW: 16841.8 Da PI: 9.7714 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.4e-19 | 21 | 72 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr ++ +gr+++eIrd + ng r++lg+f+taeeAa a+++a+ +++g EPS59543.1 21 TRYIGVRKRP-WGRYASEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAAFAIRG 72 589*******.**********44465..************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-13 | 21 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.78E-27 | 21 | 80 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-22 | 22 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.733 | 22 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 22 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 22 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-10 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
LHYPNNMDSS STTHSGRFEK TRYIGVRKRP WGRYASEIRD STRNGIRVWL GTFDTAEEAA 60 LAYDQAAFAI RGTASRLNFP LDRVVESLDE RLDYWPADGG SPARDLSERN RKSAKRTRRR 120 RKRPITGEDD LIVLEDLGTD LLDQLLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-26 | 19 | 82 | 11 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 123 | RKSAKRTRRRRKRP |
2 | 114 | 122 | KRTRRRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838903.1 | 2e-52 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-40 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | S8DA21 | 1e-101 | S8DA21_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K00942.1.p | 6e-52 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 7e-26 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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