PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59519.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SBP

Protein Properties

Length: 116aa MW: 13308 Da PI: 10.3973

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59519.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.4	7.6e-42	22	99	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhrrh++Ce hsk+p+v+v+g+e+rfCqqCsrfhelsefD++krsCrrrL++hn+rrr+ q+ EPS59519.1 22 CCQVEGCNLDLKSAKDYHRRHRICESHSKSPKVVVAGMERRFCQQCSRFHELSEFDDKKRSCRRRLSDHNARRRRVQP 99 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-35	18	84	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.488	20	97	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-39	21	102	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-33	23	96	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
PVSSSTPSKR SRASYHNIQN PCCQVEGCNL DLKSAKDYHR RHRICESHSK SPKVVVAGME 60 RRFCQQCSRF HELSEFDDKK RSCRRRLSDH NARRRRVQPE SIQFASAGLS SALYAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-30	23	96	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	95	KKRSCRRRLSDHNARRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874058.1	9e-64	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 3
Swissprot	A2X0Q6	3e-46	SPL3_ORYSI; Squamosa promoter-binding-like protein 3
Swissprot	A3A2Z8	3e-46	SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBL	S8BYP5	6e-79	S8BYP5_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010252163.1	1e-60	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13644	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-44	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]