PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59389.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARR-B
Protein Properties Length: 282aa    MW: 31776.8 Da    PI: 7.0514
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59389.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.43.7e-24175228155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++Wt +LH++Fv+av+q+ G ek  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  EPS59389.1 175 KARVVWTVDLHQSFVRAVNQI-GLEKIGPKKILDLMGVPWLTRENVASHLQKYRL 228
                 68*******************.********************************7 PP
2Response_reg77.64.4e-26171251109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k +y ev+++  + eal +l+ek+  +D+++ D++mp+mdG++ll+     e++lp+i+++  ge   + + +  Ga 
    EPS59389.1  17 VLVVDDDPTWLKILEKMLKKCDY-EVRTCNLAWEALGILREKReeFDIVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSVDGETRRVMKGVLHGAC 111
                   89*********************.***************999999*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
    EPS59389.1 112 DYLLKPIRMKELRN 125
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.28E-3514144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-4214154No hitNo description
SMARTSM004481.9E-3015127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.58216131IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2317126IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.00E-2718131No hitNo description
Gene3DG3DSA:1.10.10.602.0E-27172233IPR009057Homeodomain-like
SuperFamilySSF466891.43E-17173232IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-22175229IPR006447Myb domain, plants
PfamPF002495.9E-7177227IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MHSTGFSADS FPAGLRVLVV DDDPTWLKIL EKMLKKCDYE VRTCNLAWEA LGILREKREE  60
FDIVISDVNM PDMDGFKLLE LVGLEMDLPV IMMSVDGETR RVMKGVLHGA CDYLLKPIRM  120
KELRNIWQHV LRKKMAEGSE TTIEELLVSG TNGKKRKKEA AASEESSSSS ASSKKARVVW  180
TVDLHQSFVR AVNQIGLEKI GPKKILDLMG VPWLTRENVA SHLQKYRLFL NRLQKEKELK  240
AAFVDVEAME KTQPDSSSSN PEMFDGSVAE LGPTERAGRQ VP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17172233263ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855343.11e-126PREDICTED: two-component response regulator ARR11-like isoform X2
RefseqXP_016464421.11e-126PREDICTED: two-component response regulator ARR11-like
SwissprotQ5N6V81e-112ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLS8BYD50.0S8BYD5_9LAMI; Uncharacterized protein
STRINGSolyc05g014260.2.11e-124(Solanum lycopersicum)
STRINGXP_009793670.11e-124(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.13e-99response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]