PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59345.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 624aa    MW: 69627.6 Da    PI: 6.2413
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59345.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.79.1e-188723399
                -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                +++l+ +d+++ +W++k+i+r++++r++lt+GW+ Fv+a++L +gD+vvF   ++++ +l+++++r+
  EPS59345.1  8 TQELIARDLHNIEWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVVFI--WNEKNQLLLGIRRA 72
                358999*********************************************..8899999****997 PP
2Auxin_resp1187.6e-3997180183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast + F+v+YnPras+seF+++++k++ka++ ++vsvGmRf+m fet++ss rr++Gt++g+sd+dp++WpnS+Wrs+k
  EPS59345.1  97 AAHAASTYTRFTVFYNPRASPSEFIIPLAKYLKAVYhTRVSVGMRFRMLFETDESSVRRYMGTITGISDSDPLKWPNSHWRSVK 180
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-241100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.041173IPR003340B3 DNA binding domain
SMARTSM010191.0E-5273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-25285IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-15672IPR003340B3 DNA binding domain
CDDcd100178.32E-13671No hitNo description
PfamPF065071.0E-3397180IPR010525Auxin response factor
PfamPF023092.4E-8519611IPR033389AUX/IAA domain
PROSITE profilePS5174524.21526610IPR000270PB1 domain
SuperFamilySSF542772.75E-7526601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
DFSQQPPTQE LIARDLHNIE WKFKHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVVFIWN  60
EKNQLLLGIR RANRPETVIP TSVLSSDSMH LGLLAAAAHA ASTYTRFTVF YNPRASPSEF  120
IIPLAKYLKA VYHTRVSVGM RFRMLFETDE SSVRRYMGTI TGISDSDPLK WPNSHWRSVK  180
VGWDESAAGG RQPRVSLWEI EPLTTFPIYP TSFPLRLKRY HSFSGMKADD MRLTSSPFWL  240
CGDGLYQGMG FNPWLQQQQQ PRLDSSLLGL QTDIYQTMAN AAAVSTQEGC NVVQFQQPRA  300
PESRTSGFIE SQMLQNNSKP SAYFLESHAA TEVIEPQLLH QSSFSVPMQI RHQYNEQPHM  360
NYQVQLQAKQ SLSNAKLIPV DSVSPLHSVL GSAIDDEASN SFLSFRCRPT KRIAVDPLLS  420
GNMNSAAAQS SVSLLPPFPG VEQPESNDPQ NHLLFGVNID SSSPLGLPSN SESGSMAFPG  480
SSYVSGFGAD CSLNFNPKVS SSTCIDESDF ILSSENNLEQ AAPLDSTFVK VYKSGSFGRS  540
LDITKFSSYH ELRSQLARMF GLEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWEEFVNSV  600
WCIKILSPQE VQEMGTLGME LLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-871201188388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096635.10.0auxin response factor 6 isoform X1
RefseqXP_011096636.10.0auxin response factor 6 isoform X2
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLS8BXR40.0S8BXR4_9LAMI; Auxin response factor (Fragment)
STRINGXP_006468258.10.0(Citrus sinensis)
STRINGXP_006448968.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.11e-174auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]