PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59260.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 163aa MW: 19132.9 Da PI: 10.0856

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59260.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	29	83	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Le+ F+ + +++ ++++eLA++l+L rqV vWFqNrRa+ k EPS59260.1 29 RKKLRLTKPQSALLEQSFRHHTTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 83 677899***********************************************98 PP
2	HD-ZIP_I/II	114.8	5.4e-37	29	116	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k q++lLE+sF+++++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E d++++k+ +++l+een+ L+ke ++L+ EPS59260.1 29 RKKLRLTKPQSALLEQSFRHHTTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEIDFAFMKKYCETLMEENRWLHKELKALQ 116 69***********************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-18	21	86	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-17	24	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	25	85	IPR001356	Homeobox domain
SMART	SM00389	1.0E-14	27	89	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	29	83	IPR001356	Homeobox domain
CDD	cd00086	2.93E-13	29	86	No hit	No description
PROSITE pattern	PS00027	0	60	83	IPR017970	Homeobox, conserved site
SMART	SM00340	3.3E-10	85	125	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
SAKREREFLT EEIETERVSS EDDDTPNCRK KLRLTKPQSA LLEQSFRHHT TLNPKQKQEL 60 ARELKLRPRQ VEVWFQNRRA RTKLKQTEID FAFMKKYCET LMEENRWLHK ELKALQLSHP 120 LNTPAATLTL CPSCEKITAV STADNNNPSK GLFTLSRKPH LFT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	85	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486665.1	2e-67	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	4e-54	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	S8BXA1	1e-115	S8BXA1_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009592889.1	1e-66	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-55	HD-ZIP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]