PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59202.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family RAV
Protein Properties Length: 326aa    MW: 36161.8 Da    PI: 9.3579
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59202.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.8e-133684155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s++kGV   + +grW A+I++      + r++lg+f  +e+Aa+a++aa+++++g
  EPS59202.1 36 SRFKGVVPQP-NGRWGAQIYEK-----HHRVWLGTFNDEEDAARAYDAAAQRFRG 84
                689***9788.8*********3.....5*************************98 PP
2B398.73.6e-31158248187
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f+k+ tpsdv+k++rlv+pk++ae+h    +g++++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L++gD+++F+++  
  EPS59202.1 158 FEKAVTPSDVGKLNRLVIPKQHAERHfpkqSGSNAKGVLLNFEDVCGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKELRAGDIIIFRRSTG 248
                 89****************************777789***************************************************6643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-173692IPR016177DNA-binding domain
PfamPF008476.5E-83684IPR001471AP2/ERF domain
CDDcd000185.98E-133693No hitNo description
PROSITE profilePS5103219.9543792IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-203792IPR001471AP2/ERF domain
SMARTSM003803.0E-273798IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-40150263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-30154246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-28156246No hitNo description
PROSITE profilePS5086314.184158261IPR003340B3 DNA binding domain
PfamPF023624.0E-28158252IPR003340B3 DNA binding domain
SMARTSM010198.4E-24158263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEDESSTTES VSAAAPVRLL GNLVESEIES RKLPSSRFKG VVPQPNGRWG AQIYEKHHRV  60
WLGTFNDEED AARAYDAAAQ RFRGRDAVTN FKAPAIDESE VAFLNSHSKA EIVDMLRKHT  120
YYDELEQCRK KCDGAGKAFG GDVLAGTGVS SDRREHLFEK AVTPSDVGKL NRLVIPKQHA  180
ERHFPKQSGS NAKGVLLNFE DVCGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKELRAGDI  240
IIFRRSTGAD APPQLYIDWK SRSHAAGHDG RIGGVAPVVR LFGVNINSAA AAAFDGGCCC  300
GGGKRIREID ILGFDRCKKQ RIINAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5415526311118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846076.11e-142PREDICTED: LOW QUALITY PROTEIN: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotP822801e-128RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLS8DIF40.0S8DIF4_9LAMI; Uncharacterized protein
STRINGcassava4.1_010157m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-118related to ABI3/VP1 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  3. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  4. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  5. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  7. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]