PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59092.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20320.4 Da PI: 10.7364 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.7 | 2.7e-22 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie++ r+vtfskRr g++KKA ELS+LC++++aviifs g+ y + EPS59092.1 17 KLIEDDNARTVTFSKRRVGVFKKATELSILCGVQIAVIIFSFAGRAYSF 65 569*****************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.85E-26 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-31 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.777 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-18 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-22 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-18 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-18 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
PPAQRRRSLG RRKIEMKLIE DDNARTVTFS KRRVGVFKKA TELSILCGVQ IAVIIFSFAG 60 RAYSFGHPDV DSVIGKFSNR NATAPDDERE SSVQGTRIHG LVVQQLKEEL DEKKERLMDQ 120 KRKGREVSEL LRNSPQQIIS EESLRLLDMP RLKKLRGALV KLKEDILQQV QGKNKVGAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 1e-16 | 11 | 88 | 18 | 100 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 1e-16 | 11 | 88 | 18 | 100 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
5f28_A | 1e-16 | 9 | 92 | 1 | 82 | MEF2C |
5f28_B | 1e-16 | 9 | 92 | 1 | 82 | MEF2C |
5f28_C | 1e-16 | 9 | 92 | 1 | 82 | MEF2C |
5f28_D | 1e-16 | 9 | 92 | 1 | 82 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827635.1 | 4e-49 | PREDICTED: uncharacterized protein LOC105948920 | ||||
TrEMBL | S8DI54 | 1e-125 | S8DI54_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.I00404.1.p | 4e-51 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15656 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-26 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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