PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58722.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 520aa MW: 57005.4 Da PI: 4.9485

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58722.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	421.6	6.4e-129	166	518	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 lv++L++cAeav+++d +la+al++++ l +++ +m+++aayf+eAL +r++r ++ p + + +++ l f+e++P+lkf+h+taN EPS58722.1 166 LVHTLMACAEAVQQEDYKLAEALVKNVGFLTVSQAGAMRKVAAYFAEALTRRIYR----CS---YPAAFA---ADNN--LLIHFYEACPYLKFAHFTAN 252 689**************************************************....22...222222...2233..3345************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaIlea++g++rvH+iDf+++qG+QWpaLl+aLa Rp+gpp++R+Tg+g+p +e+g+rL+++A++++v+f+++ v+++l+dl++ +L++++ EPS58722.1 253 QAILEAFAGKDRVHVIDFGVKQGMQWPALLHALALRPGGPPTFRLTGIGPP-------SREVGWRLSELADTVHVEFDYKDTVTDSLADLDIAMLDIRE 344 **********************************************5.......59*****************9999********** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 gE+laVn+v++lh ll+++ + +vL+lv++l+P++++vveqea+++++ Fl+rf+eal+yysa+fdsle+ +++s e++++++++lgr+i+nv EPS58722.1 345 GETLAVNSVFELHPLLAKPPAEIG---RVLQLVRELKPEIFTVVEQEANLSGNFFLDRFTEALHYYSAIFDSLESCGGAASGEDKMMSEVYLGRQICNV 440 ************77766655...9*******************************************99****************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+cega+r+er etle+W++rl++aGF+pv+l+++++kqa lll+ ++ +dgyrvee++g+l+lgW++rp++++SaW+ EPS58722.1 441 VSCEGADRFERYETLERWKRRLGRAGFQPVRLGSNVYKQAILLLALFAgGDGYRVEENDGCLMLGWHTRPIIATSAWK 518 ***************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	1.1E-28	28	101	No hit	No description
Pfam	PF12041	5.0E-28	28	93	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	62.609	140	497	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-126	166	518	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
KRDYGNQENF SSSGSSSSSG KVKAADEDEL FAVLGYSVRS SDMEDVAQKI QKLEEAMGGK 60 DGLSQLSSSE TVHYNPSDLS SWLESMISEL NPPDPFLDSS TADNRAGTAV DLDFGSDLIS 120 IPGKAVYPSP QGKKAKTTSC SGNHPAAAEP PTRSLLVDSQ ENGIRLVHTL MACAEAVQQE 180 DYKLAEALVK NVGFLTVSQA GAMRKVAAYF AEALTRRIYR CSYPAAFAAD NNLLIHFYEA 240 CPYLKFAHFT ANQAILEAFA GKDRVHVIDF GVKQGMQWPA LLHALALRPG GPPTFRLTGI 300 GPPSREVGWR LSELADTVHV EFDYKDTVTD SLADLDIAML DIREGETLAV NSVFELHPLL 360 AKPPAEIGRV LQLVRELKPE IFTVVEQEAN LSGNFFLDRF TEALHYYSAI FDSLESCGGA 420 ASGEDKMMSE VYLGRQICNV VSCEGADRFE RYETLERWKR RLGRAGFQPV RLGSNVYKQA 480 ILLLALFAGG DGYRVEENDG CLMLGWHTRP IIATSAWKLS

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

KRDYGNQENF SSSGSSSSSG KVKAADEDEL FAVLGYSVRS SDMEDVAQKI QKLEEAMGGK  60
DGLSQLSSSE TVHYNPSDLS SWLESMISEL NPPDPFLDSS TADNRAGTAV DLDFGSDLIS  120
IPGKAVYPSP QGKKAKTTSC SGNHPAAAEP PTRSLLVDSQ ENGIRLVHTL MACAEAVQQE  180
DYKLAEALVK NVGFLTVSQA GAMRKVAAYF AEALTRRIYR CSYPAAFAAD NNLLIHFYEA  240
CPYLKFAHFT ANQAILEAFA GKDRVHVIDF GVKQGMQWPA LLHALALRPG GPPTFRLTGI  300
GPPSREVGWR LSELADTVHV EFDYKDTVTD SLADLDIAML DIREGETLAV NSVFELHPLL  360
AKPPAEIGRV LQLVRELKPE IFTVVEQEAN LSGNFFLDRF TEALHYYSAI FDSLESCGGA  420
ASGEDKMMSE VYLGRQICNV VSCEGADRFE RYETLERWKR RLGRAGFQPV RLGSNVYKQA  480
ILLLALFAGG DGYRVEENDG CLMLGWHTRP IIATSAWKLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-66	161	517	14	378	Protein SCARECROW
5b3h_A	1e-66	161	517	13	377	Protein SCARECROW
5b3h_D	1e-66	161	517	13	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070609.1	0.0	DELLA protein GAI1
Swissprot	Q8S4W7	0.0	GAI1_VITVI; DELLA protein GAI1
TrEMBL	S8DH64	0.0	S8DH64_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.E00445.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]