PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58685.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 34401 Da PI: 6.8731

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58685.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4e-19	7	62	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++++q+++Le++++++++p++++r++L+++l+L+ +q+k+WFqN+R+++k EPS58685.1 7 KKQYHRHSAQQIKQLEDFYKQCPHPDKNQRQQLSRELSLDVKQIKFWFQNKRTQMK 62 688899***********************************************998 PP
2	START	32.1	2.7e-11	194	298	3	92
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 a a++elv + ++ep+W k + + + +d + + f++s+ + e +++sg v m+++ lve+lld++ +W+ +++ +a+ l+ +++g EPS58685.1 194 AIGAMNELVELLHVNEPLWIKAAvdgrQALHRDSYDKLFPKSHHfrsatARFESSKDSGEVAMAAVHLVEILLDVN-KWKDMFPtiviRAQSLDLLDTG 291 5679********************999999999999999998999999**********************.*****999999999999999 PP ...EEEE CS START 89 ...galq 92 g+l+ EPS58685.1 292 ilgGILH 298 8855544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-18	2	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.68E-18	2	68	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.374	4	64	IPR001356	Homeobox domain
SMART	SM00389	2.6E-16	6	68	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-16	7	62	IPR001356	Homeobox domain
CDD	cd00086	1.27E-15	7	65	No hit	No description
PROSITE pattern	PS00027	0	39	62	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	15.488	183	300	IPR002913	START domain
Pfam	PF01852	5.0E-6	196	297	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
SDSKRSKKQY HRHSAQQIKQ LEDFYKQCPH PDKNQRQQLS RELSLDVKQI KFWFQNKRTQ 60 MKAQNERADN DALRAENERI HCENLTLQHS LRNIYCPVCN GSDVSESERS NTLQILKMEN 120 ARLKEEHEHA VGFISNHIGN LSNGIDIPEN MQEPLVGVTP LVHKDMSQHL ENYNVSHWAN 180 GLLEIDKSII IETAIGAMNE LVELLHVNEP LWIKAAVDGR QALHRDSYDK LFPKSHHFRS 240 ATARFESSKD SGEVAMAAVH LVEILLDVNK WKDMFPTIVI RAQSLDLLDT GILGGILHLV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551334.1	1e-143	homeobox-leucine zipper protein ROC8 isoform X2
TrEMBL	S8BVP0	0.0	S8BVP0_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.H02245.1.p	1e-131	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1021	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	2e-68	homeodomain GLABROUS 11

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]