PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58538.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family Trihelix
Protein Properties Length: 340aa    MW: 40666.5 Da    PI: 8.5623
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58538.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.4e-142493887
    trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                ++e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  EPS58538.1  2 CEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 49
                89******************************98..55667*******85 PP
2trihelix62.31.2e-19225307283
    trihelix   2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                 W++ e+ +Li++r++me +++++    +++lWee+s+kmr  g ers  +Ck+kwe +n++  k+ + +k++++ s+ +  yf+
  EPS58538.1 225 WPEMEINKLIQLRTSMEMKFQQRGvvPEEALWEEISAKMRCCGHERSGFTCKHKWEAVNNYLLKCSKKRKEENN-SKGSSTYFE 307
                 *********************8643499**************************************99999743.333455665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-9350No hitNo description
PfamPF138374.1E-12225307No hitNo description
CDDcd122032.00E-14225289No hitNo description
PROSITE profilePS500906.435225283IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MCEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGGESNNNNN  60
TSESHQFQFN FQQKLHGQKL LSETSLSLSN YSEPEYTTSS SEEQDPKNKK KKNWKAKIKD  120
FIDARMKRLM ERQDLWMDRM MRTMENNEKE RMSREEEWRS QHIAMMEHEH ELWDRERAWI  180
RSRDATLMET LHRVASGKEV PPIIPDNHHA YRGGTTTTES PVDIWPEMEI NKLIQLRTSM  240
EMKFQQRGVV PEEALWEEIS AKMRCCGHER SGFTCKHKWE AVNNYLLKCS KKRKEENNSK  300
GSSTYFEPFS QPEEALEQSF ISLSDHHHHH HHHQHHNGSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094408.11e-107trihelix transcription factor PTL
TrEMBLS8D7910.0S8D791_9LAMI; Uncharacterized protein
STRINGXP_009789130.11e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-66Trihelix family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]