PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58402.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB_related

Protein Properties

Length: 236aa MW: 26736.1 Da PI: 4.4681

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58402.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.6e-18	26	67	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++eE++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ EPS58402.1 26 LSEEEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 67 69***************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-22	4	77	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-5	4	16	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.17	4	17	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-25	17	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	27.522	18	72	IPR017930	Myb domain
SMART	SM00717	1.3E-16	22	70	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-16	26	67	IPR001005	SANT/Myb domain
CDD	cd00167	3.09E-13	27	68	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
GLLRCGKSCR LRWTNYLRPD VKRGLLSEEE EKMVIDLHAQ LGNRWSKIAS HLPGRTDNEI 60 KNHWNTHIKK KLRKMGIDPL THKPLPLQEP ESAVAEKREE NRTAAPAPAA GVEEDEEEEE 120 ERSSTVSKFD ELLLLNVNNP VDFCVDEIPV VDPGEVILFR CDENSSTPTT SSSSSWSSAS 180 SANVPEELRF IDEIFMGDSW YDDLSCLDFL LETDGKLMMM NMDGIGVDSV KEPWKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-22	4	72	40	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269\|PubMed:23660402}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269\|PubMed:23660402}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085868.1	2e-70	protein ODORANT1
Swissprot	Q9C7U7	2e-56	MYB20_ARATH; Transcription factor MYB20
TrEMBL	S8DGC8	1e-173	S8DGC8_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009616533.1	2e-64	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16600.1	5e-56	myb domain protein 43

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]