PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58378.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ERF

Protein Properties

Length: 93aa MW: 10488.1 Da PI: 11.8952

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58378.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.9	5.2e-18	8	57	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ ++r++lg+f ++e+Aa+a++ a ++++g EPS58378.1 8 LYRGVRMRN-WGKWVSEIREPRK---KTRIWLGTFASPEMAARAHDVASLSIKG 57 69**998.******843...6******************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.1E-12	7	57	IPR001471	AP2/ERF domain
CDD	cd00018	4.65E-30	7	67	No hit	No description
SuperFamily	SSF54171	6.54E-22	8	65	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.6E-31	8	66	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.576	8	65	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-35	8	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-10	9	20	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-10	31	47	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
RSPGKHPLYR GVRMRNWGKW VSEIREPRKK TRIWLGTFAS PEMAARAHDV ASLSIKGSNA 60 VLNFPELSSV LPRPVSLRPH DVRAAAIEFA SRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-18	5	65	11	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047241.2	4e-47	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	2e-45	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	S8D6X0	2e-60	S8D6X0_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010047241.1	3e-46	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	7e-48	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]