PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58378.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 93aa    MW: 10488.1 Da    PI: 11.8952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58378.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-18857255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr +  +g+Wv+eIr+p++   ++r++lg+f ++e+Aa+a++ a ++++g
  EPS58378.1  8 LYRGVRMRN-WGKWVSEIREPRK---KTRIWLGTFASPEMAARAHDVASLSIKG 57
                69****998.**********843...6********************9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-12757IPR001471AP2/ERF domain
CDDcd000184.65E-30767No hitNo description
SuperFamilySSF541716.54E-22865IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-31866IPR001471AP2/ERF domain
PROSITE profilePS5103222.576865IPR001471AP2/ERF domain
SMARTSM003804.2E-35871IPR001471AP2/ERF domain
PRINTSPR003672.5E-10920IPR001471AP2/ERF domain
PRINTSPR003672.5E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
RSPGKHPLYR GVRMRNWGKW VSEIREPRKK TRIWLGTFAS PEMAARAHDV ASLSIKGSNA  60
VLNFPELSSV LPRPVSLRPH DVRAAAIEFA SRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-185651172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047241.24e-47PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-45DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLS8D6X02e-60S8D6X0_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_010047241.13e-46(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]