PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS58358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 195aa MW: 21269.8 Da PI: 8.2554 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.6 | 3.4e-29 | 1 | 50 | 11 | 59 |
ZF-HD_dimer 11 kNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 kNhAa+lGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+++ EPS58358.1 1 KNHAAALGGHAVDGCGEFMPSPNSNpAEPTSLKCAACGCHRNFHRREPDD 50 8***********************99********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.0E-24 | 1 | 48 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.8E-26 | 1 | 47 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.904 | 1 | 47 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-19 | 1 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 115 | 187 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.31E-15 | 115 | 186 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.8E-23 | 125 | 182 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
KNHAAALGGH AVDGCGEFMP SPNSNPAEPT SLKCAACGCH RNFHRREPDD TPPGLEAPAL 60 EYHPLHRHHP PLPPHSGSPN NSPSPPPISS SYYPSAPHML LALSHGLSSA ALPDNTPPNS 120 GSGSRKRFRT KFSQFQKVKM LELAEKVGWK MQKRDDDLIN ESCSDIGVDK GVFKVWMHNN 180 KNTFGKKDQN PPEDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-18 | 126 | 183 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061733.1 | 9e-78 | zinc-finger homeodomain protein 10-like | ||||
Swissprot | Q9LXG0 | 7e-58 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | S8D6V4 | 1e-141 | S8D6V4_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | VIT_14s0108g00750.t01 | 7e-75 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-43 | homeobox protein 34 |
Publications ? help Back to Top | |||
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