PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS58259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 137aa MW: 15607.8 Da PI: 9.3553 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 23 | 77 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k EPS58259.1 23 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 77 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 131.7 | 2.8e-42 | 23 | 113 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++dal+een+rL+ke ++Lr +lk EPS58259.1 23 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDALTEENRRLQKELHDLR-ALK 113 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 12 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.34E-19 | 17 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 21 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.00E-14 | 23 | 80 | No hit | No description |
Pfam | PF00046 | 8.2E-16 | 23 | 77 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.5E-24 | 79 | 122 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.0E-12 | 79 | 113 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
GGGGGGGAAE RISDDDENGV NTRKKLRLSK EQSAFLEESF KEHNTLNPKQ KLALAKQLNL 60 RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCDALTEENR RLQKELHDLR ALKTSAPFYM 120 QIPATTLTMC PSCEKIA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | TRKKLRL |
2 | 71 | 79 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066232.1 | 9e-80 | homeobox-leucine zipper protein HOX11-like | ||||
Refseq | XP_015969427.1 | 6e-81 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 8e-75 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | S8BV53 | 4e-97 | S8BV53_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0016s05890.1 | 3e-78 | (Populus trichocarpa) | ||||
STRING | cassava4.1_010584m | 4e-78 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 8e-64 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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