PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS58052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GATA | ||||||||
Protein Properties | Length: 337aa MW: 37724.1 Da PI: 6.4261 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.3 | 6.7e-16 | 9 | 43 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t++plWR+gp ++ LCnaCG ++r kg+ EPS58052.1 9 CYHCGVTSSPLWRNGPPEKPVLCNACGSRWRTKGT 43 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.7E-8 | 3 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-12 | 4 | 48 | No hit | No description |
CDD | cd00202 | 1.06E-15 | 8 | 55 | No hit | No description |
PROSITE profile | PS50114 | 10.805 | 9 | 42 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-13 | 9 | 43 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 9 | 34 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-11 | 9 | 43 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 1.7E-6 | 289 | 332 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
EDMGKHGPCY HCGVTSSPLW RNGPPEKPVL CNACGSRWRT KGTLTNYTPL HARAEHVELE 60 ARFPKTRTIS TKSRGPKALK HKLTNDFGKY EVPPLDYNRG VHKIYDEDTS NRSSSGSAIS 120 NNESCAQYGS ADASELTGPS QQPSIWDSSV PSRKRTCIGR PKPSPVEKLT KDLYTIWHQQ 180 QSSCFSGSSE EDLLVETDKP MVSVEIGHGS VLIRHPSSIT KEEESEASSL SFENKLLNTW 240 KVTPFSDLIE DSGAKTWSER ARKFNKPNVN QETLLEIAWE NGGMDKLQIL GNQESPLLWI 300 DLQDILNYEK YSGLLSNEER QKLLKYLPSV DSLDAPD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019263527.1 | 1e-131 | PREDICTED: GATA transcription factor 26 isoform X2 | ||||
Swissprot | Q8W4H1 | 2e-90 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | S8DF89 | 0.0 | S8DF89_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009772103.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2089 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 3e-93 | GATA transcription factor 26 |
Publications ? help Back to Top | |||
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