PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57974.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 358aa    MW: 40076.8 Da    PI: 7.9677
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57974.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-19865457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le++++++++psa +r++L +++    +++ +q+kvWFqNrR +ek+
  EPS57974.1  8 YVRYTPEQVEALERVYYECPKPSALRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 65
                6789****************************************************97 PP
2START153.22.2e-481543572199
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.dsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                 +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++ + + a+ra+ +v  ++a  v+e+l+dk+ W ++++++++++v+s++  g+++l +++
  EPS57974.1 154 FAEETLTEFLSKATGTAVKWIQMPGMKPGPDSIGIVAISHGsSGVVASRACCLVGLEPA-RVAEILKDKLSWYRDCRAVDVVNVLSTAagGTIELVYMQ 251
                 6899************************************99999**************.9**************************999********* PP

                 XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHH CS
       START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaeg 192
                 l+a+++l+p Rdf+ +Ry+  + +g++ ++++S++  ++ p+    +++vR+e lpSg+li+p+++g+s +++v+h dl+++  ++ +r l+ks++  +
  EPS57974.1 252 LYAPTTLAPaRDFWLLRYTSVMDDGTLSVCERSLNDARNGPSmppVQHFVRGEILPSGYLIRPCEGGGSIIHIVDHHDLESWNAPEFIRMLYKSSTLLA 350
                 *************************************9999888899**************************************************** PP

                 HHHHHHH CS
       START 193 aktwvat 199
                 ++t++a 
  EPS57974.1 351 QRTTLAV 357
                 ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.4E-15470IPR001356Homeobox domain
CDDcd000863.68E-16767No hitNo description
SuperFamilySSF466892.52E-17771IPR009057Homeodomain-like
PfamPF000467.1E-17865IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-18965IPR009057Homeodomain-like
PROSITE profilePS5007115.1111066IPR001356Homeobox domain
CDDcd146861.50E-65998No hitNo description
PROSITE profilePS5084824.603144358IPR002913START domain
SuperFamilySSF559614.26E-33147345No hitNo description
CDDcd088752.20E-69148357No hitNo description
SMARTSM002346.9E-25153357IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-21154339IPR023393START-like domain
PfamPF018521.2E-45154357IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGFDGGKYVR YTPEQVEALE RVYYECPKPS ALRRQQLIRE CPILSNIEPK QIKVWFQNRR  60
CREKQRKESS QLQSVNRKLS AMNRLLMEEN ERLQKQVSQL VYENTSFRQQ SHNATTLAAT  120
DNSCDSVVTS GQHHHHLTLQ NPLQEASPSG LLSFAEETLT EFLSKATGTA VKWIQMPGMK  180
PGPDSIGIVA ISHGSSGVVA SRACCLVGLE PARVAEILKD KLSWYRDCRA VDVVNVLSTA  240
AGGTIELVYM QLYAPTTLAP ARDFWLLRYT SVMDDGTLSV CERSLNDARN GPSMPPVQHF  300
VRGEILPSGY LIRPCEGGGS IIHIVDHHDL ESWNAPEFIR MLYKSSTLLA QRTTLAVM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081776.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLS8BUC60.0S8BUC6_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.A00196.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  4. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  5. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  6. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  7. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  8. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  9. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]