PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 26710 Da PI: 9.2646 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3.2e-08 | 6 | 51 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT eE +++ d+ + + + +W ++a+ ++ g++ ++ + ++ EPS57937.1 6 AWTVEENKKFEDLLAVYDEKtpnRWFKVAKSIP-GKSVSDVMNQYRV 51 7********************************.**********986 PP | |||||||
2 | Myb_DNA-binding | 40.7 | 5.4e-13 | 116 | 160 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W++I+r +t+ q+ s+ qky EPS57937.1 116 PWTEDEHRRFLLGLQKHGKGDWRSISRNYVISKTPTQVASHAQKY 160 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.91 | 2 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 2.6E-9 | 3 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.53E-8 | 6 | 52 | No hit | No description |
Pfam | PF00249 | 8.7E-7 | 6 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.59E-11 | 6 | 60 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 6 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.688 | 109 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.86E-15 | 110 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-18 | 112 | 164 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.8E-11 | 113 | 165 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-10 | 113 | 163 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-11 | 116 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.93E-9 | 116 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEEATAWTVE ENKKFEDLLA VYDEKTPNRW FKVAKSIPGK SVSDVMNQYR VLESDVCNIE 60 AGLIPIPVYL ASSSSSSSAA AAAASFTLKL AGGLEVYRKR SRDCAAHEQE RKKGVPWTED 120 EHRRFLLGLQ KHGKGDWRSI SRNYVISKTP TQVASHAQKY YQRQLSGRKD RRRPSIHDIT 180 IVNPSSSSAP PVSGAEIPSS MKNAVGEMGG GGFIVLNSDN AFANDDHFGF SISAAGYGFM 240 GFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-14 | 7 | 72 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00489 | DAP | Transfer from AT5G05790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076737.1 | 5e-86 | transcription factor DIVARICATA-like | ||||
Refseq | XP_011076738.1 | 5e-86 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-71 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | S8DEZ4 | 0.0 | S8DEZ4_9LAMI; Myb family transcription factor | ||||
STRING | evm.model.supercontig_19.216 | 3e-79 | (Carica papaya) | ||||
STRING | Migut.F00707.1.p | 2e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 7e-75 | MYB family protein |
Publications ? help Back to Top | |||
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