PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 143aa MW: 16253.7 Da PI: 9.9599 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.9 | 5.3e-23 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie+k rqvtfskRr+g++KKA+ LS+LC+a+v ii+s +gkl+ +s+ EPS57876.1 10 PIEDKNARQVTFSKRRKGLFKKAKMLSILCGADVGAIIISCRGKLHQFST 59 69**********************************************96 PP | |||||||
2 | K-box | 16.4 | 3.6e-07 | 115 | 140 | 45 | 70 |
K-box 45 sLslkeLqqLeqqLekslkkiRskKn 70 s s+ +L Le+qLe +l +iR+ K EPS57876.1 115 SHSVTDLAVLEKQLEVALIQIREAKV 140 56899******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.745 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-25 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.33E-31 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 5.5E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MGRRRLEIRP IEDKNARQVT FSKRRKGLFK KAKMLSILCG ADVGAIIISC RGKLHQFSTS 60 NSLPRTLRRY YNYAESESGT SDGPPSEEQL SKDSEYITKE ELLRIIHRGI DEPNSHSVTD 120 LAVLEKQLEV ALIQIREAKV IVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-14 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 7e-14 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 7e-14 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 7e-14 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 9 | RRRLEIRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625850.1 | 2e-42 | PREDICTED: agamous-like MADS-box protein AGL27 | ||||
TrEMBL | S8C0F5 | 1e-100 | S8C0F5_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009625850.1 | 7e-42 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65080.1 | 2e-29 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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