PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS57803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 108aa MW: 12808.8 Da PI: 10.5148 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.1e-18 | 19 | 72 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le++Fe ++++ ++ ++A+++gL+ rqV +WFqNrRa+ k EPS57803.1 19 KKRRLKSEQVKLLEKVFEVENKLVPCRKLQIAREIGLNPRQVAIWFQNRRARSK 72 56689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 116.5 | 1.6e-37 | 18 | 107 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl++eqvklLE+ Fe e+kL p rK ++are+gl+prqva+WFqnrRAR k+k lEk+++aLk++yd lk+e +++ ke+++Lre+ EPS57803.1 18 EKKRRLKSEQVKLLEKVFEVENKLVPCRKLQIAREIGLNPRQVAIWFQNRRARSKSKVLEKEFDALKSKYDDLKSEYDAVLKENQKLREA 107 69*************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.39E-18 | 11 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.18 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.6E-15 | 17 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-10 | 19 | 74 | No hit | No description |
Pfam | PF00046 | 3.1E-15 | 19 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-18 | 20 | 81 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.1E-6 | 45 | 54 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-6 | 54 | 70 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.7E-11 | 74 | 106 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 108 aa Download sequence Send to blast |
EKRISENRDG NGSCHRPEKK RRLKSEQVKL LEKVFEVENK LVPCRKLQIA REIGLNPRQV 60 AIWFQNRRAR SKSKVLEKEF DALKSKYDDL KSEYDAVLKE NQKLREAV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 18 | 23 | KKRRLK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855432.1 | 4e-38 | PREDICTED: homeobox-leucine zipper protein ATHB-54-like | ||||
Swissprot | Q02283 | 9e-35 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | S8D515 | 1e-70 | S8D515_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.E00117.1.p | 1e-37 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-37 | homeobox 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|