PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57791.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31268.8 Da PI: 8.7167 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.9e-08 | 14 | 59 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT eE + + +a +++ ++ +W+ +a++++ g+t +++ ++ EPS57791.1 14 KWTVEENKMFENALALFDKDtpdRWHNVAAMVP-GKTVGDVIKQYRE 59 7********************************.*******999986 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 133 | 177 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky EPS57791.1 133 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.85 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 4.0E-9 | 11 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.69E-7 | 14 | 61 | No hit | No description |
Pfam | PF00249 | 1.5E-6 | 14 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.18E-12 | 14 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.347 | 126 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-17 | 128 | 181 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-17 | 129 | 181 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.1E-13 | 130 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-13 | 130 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-10 | 133 | 178 | No hit | No description |
Pfam | PF00249 | 1.7E-12 | 133 | 177 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGSWEENKAA GAAKWTVEEN KMFENALALF DKDTPDRWHN VAAMVPGKTV GDVIKQYREL 60 VDDVTDIEAG LIPVPGYVNN SNTSNSSFTL EWVNDHRHRH FYTHPKRISS SSTSTTSTSS 120 RCSTEHERKK GVPWTEEEHR QFLMGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR 180 QLSGGKDKRR SSIHDITTVT IEETNHIHHH HQHHCPPPPP PPPPPPPPPE KDAPQLAGFI 240 PSSSALGVSQ LDFDLHGLRL GAPHHHHHHH NHIFKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-17 | 15 | 77 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443176.1 | 1e-102 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-85 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | S8C011 | 0.0 | S8C011_9LAMI; Uncharacterized protein | ||||
STRING | XP_009802192.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-88 | MYB family protein |
Publications ? help Back to Top | |||
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