PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57715.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | DBB | ||||||||
Protein Properties | Length: 190aa MW: 20495.2 Da PI: 6.1358 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.3 | 5e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e ++ C ++ lC C ++ H H++vpl EPS57715.1 4 QCNVCEATVATVLCCADEAALCSGCDQKVHAAnklagkHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 31.3 | 4.1e-10 | 52 | 94 | 1 | 37 |
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s+++kC+ ++e +fC +++ llC++C l++H+ H EPS57715.1 52 SQMPKCDICQETVGYFFCLEDRALLCRKCDLAIHSVnplvstH 94 689*********9*********************435555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.911 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.12E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 3.0E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 7.32E-5 | 45 | 86 | No hit | No description |
PROSITE profile | PS50119 | 9.286 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.2E-17 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.6E-8 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.66E-8 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MKIQCNVCEA TVATVLCCAD EAALCSGCDQ KVHAANKLAG KHQRVPLSSS SSQMPKCDIC 60 QETVGYFFCL EDRALLCRKC DLAIHSVNPL VSTHQRFLLT GVKVGTEAVE HAPPEKISEH 120 TSRSTPKNAG NTTPAAAAVP AMAHFESRGD FLSSKLPTYE GGGSETISQW QLDEFLGLGD 180 YNNQSLNFMD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098187.1 | 4e-80 | B-box zinc finger protein 22 | ||||
Swissprot | Q9SYM2 | 7e-69 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | S8BSY1 | 1e-140 | S8BSY1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | PGSC0003DMT400048964 | 6e-75 | (Solanum tuberosum) | ||||
STRING | XP_010060760.1 | 5e-75 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2892 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-68 | light-regulated zinc finger protein 1 |
Publications ? help Back to Top | |||
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