PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57612.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ERF

Protein Properties

Length: 158aa MW: 18515.8 Da PI: 9.0959

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57612.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.2	1.8e-12	38	81	1	51
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 + +GV++ k + +W A I++ +k+++lg+ g+ eeAa+++++a+ EPS57612.1 38 CVMRGVYY-K-NMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 81 568*96.5.7*****4.....5******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	8.676	15	94	IPR001471	AP2/ERF domain
Pfam	PF00847	8.7E-7	38	82	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-8	39	84	IPR016177	DNA-binding domain
SMART	SM00380	2.1E-4	41	96	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-6	41	85	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MAEDFLPSTS SKEPRFTSVE VKRRKRHRRK HVENQEPCVM RGVYYKNMKW QAAIKVDKKQ 60 IHLGTVGSQE EAARLYDRAA FMCGREPNFV LSEEEKKELG KFNWEEFLAM TRLAISNKKS 120 QRRSGMIPKR FNDNSNNWDE ADDEHNAVSS PSEDEPTY

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019161316.1	2e-65	PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
Swissprot	Q56XP9	1e-45	ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBL	S8DE09	1e-115	S8DE09_9LAMI; Uncharacterized protein
STRING	GSMUA_Achr6P06510_001	5e-55	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6246	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13040.1	2e-47	ERF family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]