PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57450.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 767aa MW: 88063.7 Da PI: 7.0145

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57450.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	7.9e-26	91	193	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +Y+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k ++++ +ra ++t+Cka+++vk+++dgkw ++++e++HnH EPS57450.1 91 YYQEYARSTGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKFlnrprsrqggnldPDNASGRRACSKTDCKASMHVKRRSDGKWIIHRFEKDHNH 189 8**************************************9999899999999999887778889******************************* PP FAR1 88 elap 91 el p EPS57450.1 190 ELLP 193 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-24	91	193	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-27	291	382	IPR018289	MULE transposase domain
Pfam	PF04434	6.0E-5	571	604	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.396	571	607	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-7	582	609	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010218	Biological Process	response to far red light
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MDIDLRLPSG EHDKEIEEEP NIIDGIMVGE DKPINADGVD VSMEIVEAKL LIEAAENEDA 60 SSLHEMDFKE ATILEPLPGM EFASHGDAYA YYQEYARSTG FNTAIQNSRR SKTSREFIDA 120 KFACSRYGTK REYEKFLNRP RSRQGGNLDP DNASGRRACS KTDCKASMHV KRRSDGKWII 180 HRFEKDHNHE LLPAQAVSEQ TRRMYAAMAR QFAEYKTAVC LNHDSRSQSE KSRNVAIDAE 240 AANSLIDFFV QMQSSFCNFF YAIDIGEDQR PRNFLWVDGK SRHDYGYFSD VISFDTSYVK 300 NKYKMPLALF VGVNQHYQFM LLGCALLSDE STSTFSWVMK NWLKAMGGQP PKIIITDQDK 360 GMKPAVSEVF PSTLHYFGLW QIFGKVSESL SYVIKQNESF MPKLEKCVYR SWTEEEFDRR 420 WNKLVERFGL KENELFRSLY EDRSRWVPNI MKDGFFAGMA SGQRSESVNS FFDKYVHRKT 480 TLQEFMKQYE AILQDRYEEE VKAASDTWNK QPAMKSPSPI EKHVAGIYTN AVFRKFQVEV 540 LGAVACMPKG EDQVGTAVKF RVHDFDMNQE FIVTLNEPES EICCICRLFE FRGFLCRHAM 600 LVLQIRGIST IPYRYILKRW TKDAKTGFSP GEGTENPQSR FQRFNDLCHK AMKLSEEGSL 660 SQESYRLTVR ALDDAFENCS NSNKNLHEAA SPGVLCIEED LQSGSLNKSN KKKASIKKRK 720 VNMEPEVMPV CSHETLQQMD KMSARTVSID GFFGHQPTSV QGMVRKN

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MDIDLRLPSG EHDKEIEEEP NIIDGIMVGE DKPINADGVD VSMEIVEAKL LIEAAENEDA  60
SSLHEMDFKE ATILEPLPGM EFASHGDAYA YYQEYARSTG FNTAIQNSRR SKTSREFIDA  120
KFACSRYGTK REYEKFLNRP RSRQGGNLDP DNASGRRACS KTDCKASMHV KRRSDGKWII  180
HRFEKDHNHE LLPAQAVSEQ TRRMYAAMAR QFAEYKTAVC LNHDSRSQSE KSRNVAIDAE  240
AANSLIDFFV QMQSSFCNFF YAIDIGEDQR PRNFLWVDGK SRHDYGYFSD VISFDTSYVK  300
NKYKMPLALF VGVNQHYQFM LLGCALLSDE STSTFSWVMK NWLKAMGGQP PKIIITDQDK  360
GMKPAVSEVF PSTLHYFGLW QIFGKVSESL SYVIKQNESF MPKLEKCVYR SWTEEEFDRR  420
WNKLVERFGL KENELFRSLY EDRSRWVPNI MKDGFFAGMA SGQRSESVNS FFDKYVHRKT  480
TLQEFMKQYE AILQDRYEEE VKAASDTWNK QPAMKSPSPI EKHVAGIYTN AVFRKFQVEV  540
LGAVACMPKG EDQVGTAVKF RVHDFDMNQE FIVTLNEPES EICCICRLFE FRGFLCRHAM  600
LVLQIRGIST IPYRYILKRW TKDAKTGFSP GEGTENPQSR FQRFNDLCHK AMKLSEEGSL  660
SQESYRLTVR ALDDAFENCS NSNKNLHEAA SPGVLCIEED LQSGSLNKSN KKKASIKKRK  720
VNMEPEVMPV CSHETLQQMD KMSARTVSID GFFGHQPTSV QGMVRKN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00078	ChIP-seq	Transfer from AT3G22170	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100397.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	S8BSB6	0.0	S8BSB6_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M00094.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]