PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57409.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 286aa MW: 29865.8 Da PI: 7.0884

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57409.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.6e-10	132	176	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L EPS57409.1 132 HSIAERLRRERIAEKIRALQELVPTvN------KTDRAAMLDEIVDYVKFL 176 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.27E-11	125	181	No hit	No description
SuperFamily	SSF47459	2.88E-15	125	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.152	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-15	129	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	132	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
SASDEFLDQI LGFPGYGPGG DPDSETGAMM LQLGSGDASS PHLGVISAGV GVGMGAAYGG 60 GGFPLGLSLD PRKSAGGGYG DASGSGKRFG QGFHAPSMAA NPVVVPPPPP APHPPQMRPR 120 VRARRGQATD PHSIAERLRR ERIAEKIRAL QELVPTVNKT DRAAMLDEIV DYVKFLRLQV 180 KVLSMSRLGG AGAVAPLVTD IPISSSSSSI EGGAWEKWSS DGTERQVAKL MEENVGAAMQ 240 LLQSKALCIM PVSLASAIYH HHHHAHPPPP PESSSSITNP EFNPPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831677.1	1e-115	PREDICTED: transcription factor UNE12
Swissprot	O22768	1e-92	UNE12_ARATH; Transcription factor UNE12
Swissprot	Q93Y00	9e-93	BH007_ARATH; Transcription factor bHLH7
TrEMBL	S8BSR0	0.0	S8BSR0_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.D00370.1.p	1e-115	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5799	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03040.2	2e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]