PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 35230.2 Da PI: 6.1237 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.4e-19 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l+d+v +G g+W+tI+r g+ R++k+c++rw +yl EPS57330.1 27 RGLWSPEEDQKLIDYVSTYGHGCWSTIPRLAGLQRCGKSCRLRWINYL 74 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 80 | 122 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++T++E l++++++ lG++ W+ Ia++++ gRt++++k++w+ EPS57330.1 80 RGNFTPQEAALIIELHRILGNR-WSQIAKYLP-GRTDNEVKNFWN 122 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 18 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.575 | 22 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.55E-31 | 24 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 27 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.46E-12 | 30 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 78 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.802 | 79 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-16 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-11 | 82 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MASSSSSSSS SSSGHHHTCC NRQKVKRGLW SPEEDQKLID YVSTYGHGCW STIPRLAGLQ 60 RCGKSCRLRW INYLRPDVKR GNFTPQEAAL IIELHRILGN RWSQIAKYLP GRTDNEVKNF 120 WNSSIKKKLL AHARHCRSSD LYLPQTKPNS HQAFIPNPPP ECIVNNDVNL LLPPPAPATW 180 YDTPRVPGDR NQQREEEEKP PHAFTAAGFD YDLDKEILEA LLPELDSEKS MSMCFEEEEE 240 EEEAPPFWSL LREQQQDEED ERFFFPGPET NHHHHHHHHP YHIDNITALI ASFTSSDPPP 300 PPEMDSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 27 | 129 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027126856.1 | 3e-75 | transcription factor MYB26-like | ||||
Refseq | XP_027167856.1 | 3e-75 | transcription factor MYB26-like | ||||
TrEMBL | S8BS03 | 0.0 | S8BS03_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_009996m | 5e-74 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 2e-73 | myb domain protein 26 |
Publications ? help Back to Top | |||
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