PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57309.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ERF

Protein Properties

Length: 209aa MW: 22477.8 Da PI: 4.4235

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57309.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.9	1.4e-19	21	71	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp++ r r +lg++ taeeAa +++a+ l+g EPS57309.1 21 KKFRGVRRRP-WGKWAAEIRDPRK---RVRLWLGTYNTAEEAAMVYDHAAITLRG 71 59******.******954...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.44E-31	21	78	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-29	22	79	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.802	22	79	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-22	22	79	IPR016177	DNA-binding domain
SMART	SM00380	1.1E-34	22	85	IPR001471	AP2/ERF domain
Pfam	PF00847	9.0E-13	22	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-10	23	34	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-10	45	61	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
RKKEGGGGGG GGGGGDSGSG KKFRGVRRRP WGKWAAEIRD PRKRVRLWLG TYNTAEEAAM 60 VYDHAAITLR GPDALTNFSG PEAAPEPEGE DKKISDDESP PNVRSPKSVL PFFVSPEENS 120 RAQTTSKNDA VSCPDDHFFP IWEDLFPGSE NPLPGPELFD LAALSGDIFQ MDTLIGSTAC 180 FGSGSPLWPS DDFFQDFGDV FGSDPLVVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-20	9	78	4	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinins. {ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073588.1	2e-59	ethylene-responsive transcription factor CRF2-like
Swissprot	Q9SUQ2	6e-38	CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBL	S8BS99	1e-148	S8BS99_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.E01228.1.p	2e-58	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA494	23	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23750.2	4e-34	cytokinin response factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ckurshumova W,Berleth T Overcoming recalcitrance - Auxin response factor functions in plant regeneration. Plant Signal Behav, 2015. 10(7): p. e993293 [PMID:26098229] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Jeon J,Cho C,Lee MR,Van Binh N,Kim J CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis. Plant Cell, 2016. 28(8): p. 1828-43 [PMID:27432872]