PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | SBP | ||||||||
Protein Properties | Length: 87aa MW: 9850.33 Da PI: 10.4136 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.8 | 2.1e-40 | 13 | 87 | 1 | 75 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +Cq+++C +dl+eak yhrrhkvCe+h+ka++v+v+g+ qrfCqqCsrfhe+sefDe+krsCrrrLa+hnerrrk EPS57302.1 13 VCQADKCGVDLTEAKIYHRRHKVCEQHAKAAAVVVAGICQRFCQQCSRFHEVSEFDEAKRSCRRRLAGHNERRRK 87 6*************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-32 | 7 | 75 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.47 | 11 | 87 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.84E-36 | 13 | 87 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-31 | 14 | 87 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
PVKRVSGGSA AKVCQADKCG VDLTEAKIYH RRHKVCEQHA KAAAVVVAGI CQRFCQQCSR 60 FHEVSEFDEA KRSCRRRLAG HNERRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-40 | 6 | 87 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021682433.1 | 1e-41 | squamosa promoter-binding protein 1-like | ||||
Swissprot | Q9S7A9 | 4e-39 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | S8DD92 | 8e-55 | S8DD92_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_010260271.1 | 2e-39 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-41 | squamosa promoter binding protein-like 4 |