PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_41261_BGI-A2_v1.0
Common NameF383_17471
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25499.6 Da    PI: 7.5944
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_41261_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-193084256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                +k+++f++eq++ Le+ Fe++ ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Cotton_A_41261_BGI-A2_v1.0 30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNKRARWK 84
                                56779*************************************************9 PP
2HD-ZIP_I/II122.71.8e-3930119190
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kkrr+s+eq++lLE+ Fe+e+kLep++K++lareLglqprqva+WFqn+RAR+k+kq E+dy++Lk++yd+l+++ e+L+ke
  Cotton_A_41261_BGI-A2_v1.0  30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNKRARWKSKQKEQDYNTLKANYDNLESRFESLKKE 112
                                 59********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLree 90 
                                 +++L   
  Cotton_A_41261_BGI-A2_v1.0 113 KQSLILL 119
                                 ***9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-202088IPR009057Homeodomain-like
PROSITE profilePS5007117.9292686IPR001356Homeobox domain
SMARTSM003898.9E-182890IPR001356Homeobox domain
PfamPF000463.7E-173084IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-203193IPR009057Homeodomain-like
CDDcd000861.65E-143587No hitNo description
PRINTSPR000316.2E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000316.2E-66682IPR000047Helix-turn-helix motif
PfamPF021833.1E-1186127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
METEYHPAVD EAIAGQAPQI PRNKKMNKLK KKRRFSDEQI RLLESIFESE TKLEPRKKMQ  60
LARELGLQPR QVAIWFQNKR ARWKSKQKEQ DYNTLKANYD NLESRFESLK KEKQSLILLI  120
QKLSQLLEEP RKGRKGLDGS STDGGGGGGG SKYGENKWET EAEGQPSFQH EECLGLQTEN  180
ERDDVKQTGQ GGEEFLIMDE YRNDSPASPD KFYGLHSAGM FD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622579.11e-163PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468973e-43ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0B0NPJ81e-161A0A0B0NPJ8_GOSAR; Homeobox-leucine zipper ATHB-7-like protein
STRINGGorai.004G123100.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1899938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-35homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]