PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_41225_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 429aa    MW: 46966 Da    PI: 4.74
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_41225_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.61.2e-35120220297
                      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 
                                 lfqrlw++eDei lL+G++d+++++       + ++d+  fy+ +k++++++++k+qlveK+rrLKkK+++ ++k++sgke+s
  Cotton_A_41225_BGI-A2_v1.0 120 LFQRLWTDEDEIELLKGFLDYTTSKTNsnsshHHHHDTALFYDLIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKINSGKEFS 202
                                 79*******************7766554544334459999******************************************* PP

                      DUF573  80 fskehdqkifelskkiWg 97 
                                 f+++hdq +fe+s+kiW 
  Cotton_A_41225_BGI-A2_v1.0 203 FKSPHDQATFEISRKIWS 220
                                 *****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-32121220IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MASEQYGAVF EESQDDDEEP SSSGNDDVLN GNDEEDEELL EEEEEEDFNS PSLLPQPIAA  60
VVPSASIPAV PLAVPSSTVV TVASVPLRGS TPDSKRQRID SAVSEKKPPP PQQFDESRRL  120
FQRLWTDEDE IELLKGFLDY TTSKTNSNSS HHHHHDTALF YDLIKSKLQL DFNKNQLVEK  180
LRRLKKKYRN VMNKINSGKE FSFKSPHDQA TFEISRKIWS SSVGKVEDNV LDYDENNITP  240
TPTPTPTTTN INFLDECGEK KNLTPKSAAN KRRSKSKGGK LEEKRVLNDG FVISNNNFNN  300
RSDHDQGNVE GLGGGGGGSG AGGERGNLTA VVEETVKSCL TPVFKELLGS LIGGGGGGGR  360
GISGMAMNAM PLSFGGTSNF GSGGGGNVEF MDERWRKQQI LELEVYSKRL ELVQDQIKVA  420
LEELRSIGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5778198e-66JX577819.1 Gossypium hirsutum clone NBRI_GE9719 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626843.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A1U8NV460.0A0A1U8NV46_GOSHI; mediator-associated protein 1-like
STRINGGorai.013G121800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-62DNA-binding storekeeper protein-related transcriptional regulator