PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_41147_BGI-A2_v1.0 | ||||||||
Common Name | F383_19823 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 519aa MW: 57415.8 Da PI: 8.2351 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.9e-13 | 59 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia + R++ qc +rwqk+l Cotton_A_41147_BGI-A2_v1.0 59 KGGWTPEEDETLRNAVAAFKGKSWKKIALAFAygaaeffPDRSEVQCLHRWQKVL 113 688****************************999*****9************986 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 3e-18 | 119 | 165 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++++++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l Cotton_A_41147_BGI-A2_v1.0 119 KGPWTQKEDDKIIELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 165 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.4 | 1.2e-16 | 171 | 214 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Cotton_A_41147_BGI-A2_v1.0 171 KDAWTMEEELALMNAHRTYGNK-WAEIAKVLP-GRTDNAIKNHWNS 214 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.552 | 54 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-11 | 58 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-11 | 59 | 113 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.33E-14 | 60 | 123 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 61 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-10 | 62 | 113 | No hit | No description |
PROSITE profile | PS51294 | 31.635 | 114 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-31 | 116 | 212 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-17 | 118 | 167 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-18 | 119 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.04E-15 | 121 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-27 | 126 | 171 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.801 | 170 | 220 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 170 | 218 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 171 | 214 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 172 | 220 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-11 | 173 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 519 aa Download sequence Send to blast |
MAELRLEERC LYKKQLTTAS SSSVSEGGGN AVVKSPGVSS PAPTSPNHRR TTGPIRRAKG 60 GWTPEEDETL RNAVAAFKGK SWKKIALAFA YGAAEFFPDR SEVQCLHRWQ KVLNPDLVKG 120 PWTQKEDDKI IELVSKYGPT KWSVIAKSLP GRIGKQCRER WHNHLNPDIK KDAWTMEEEL 180 ALMNAHRTYG NKWAEIAKVL PGRTDNAIKN HWNSSLKKKL DFYLATGKLP PVSKNGLQNV 240 TKDIRTPTTQ NFLVCLKKES GSTAQTSSGT TDTCKLEEDG KDQLESSAPV QDMTASTNFI 300 PEEPTDTEST ECKLQSVDIN LCCCTSESGG KFGSHRISSQ VVEDKVLKEQ VGLDTPTYCS 360 LCCDESPRSQ HEWTSTPITS PISFFTPPCV KGSGLSIHSP EYILRIAAKS FLNTPSIFRK 420 RKMGAQVLTL PNKKGKLNEE IGKDGIQLSG EQERTENSSE QAQFCDGDPC ESPACQGDSP 480 TLPNSTVFNV SPPYRLRSNR TAVLKSVERQ LELTFDKEA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-67 | 58 | 220 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-67 | 58 | 220 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442444.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_012442451.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Swissprot | Q8H1P9 | 1e-153 | MB3R3_ARATH; Transcription factor MYB3R-3 | ||||
TrEMBL | A0A0B0NHP1 | 0.0 | A0A0B0NHP1_GOSAR; MYB3R-1: Myb-related protein 3R-1 | ||||
STRING | Gorai.001G249400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1667 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-148 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
---|---|---|---|
|