PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_41094_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 183aa    MW: 21470.3 Da    PI: 10.071
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_41094_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.5e-1165111551
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                                 ++ +r+++NRe+ArrsR RK++ ++ L   + eL++ N +    ++ 
  Cotton_A_41094_BGI-A2_v1.0  65 RKRKRMESNRESARRSRMRKQKHLDDLVGQITELKKDNNQILTSINF 111
                                 6789**********************************988777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.2E-1761125IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-1061140No hitNo description
PROSITE profilePS5021710.05963126IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.35E-1265118No hitNo description
PfamPF001706.0E-965109IPR004827Basic-leucine zipper domain
CDDcd147021.37E-1866116No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTPVVNEILR SGFIINSSLR RRTHLVQSFS VVFLYWFYVF SEIKNVGNSN SNSSGSTQHQ  60
LMDQRKRKRM ESNRESARRS RMRKQKHLDD LVGQITELKK DNNQILTSIN FTTHRYLNIE  120
AENSVLRAQM TELSQRLDSL NDILLYLNRE GIEYTTDCFT NPFNVPYLHQ QPPIMASAHI  180
FQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16485RKRKRMESNRESARRSRMRKQK
27784RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634928.11e-134PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L54e-37BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0D2NAP51e-106A0A0D2NAP5_GOSRA; Uncharacterized protein
STRINGGorai.005G109600.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.13e-39G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]