PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_40947_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 125aa MW: 14685.5 Da PI: 4.3834 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76 | 8.7e-24 | 4 | 90 | 1 | 81 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 +ppGfrF Pt+eelv++yL + +egk+ l++++vi+ vdiy+++PwdLp ++ + ++w+fF++r++++a+g+r++r t+ Cotton_A_40947_BGI-A2_v1.0 4 MPPGFRFYPTEEELVSFYLYNMLEGKQedlnaLSINRVIPVVDIYEFNPWDLPpYLCHRDPEQWFFFIPRKESEARGERPKRLTD 88 79*************************88777777779**************9666677788********************998 PP NAM 80 sg 81 +g Cotton_A_40947_BGI-A2_v1.0 89 TG 90 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-28 | 3 | 111 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.089 | 4 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-10 | 5 | 103 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MEDMPPGFRF YPTEEELVSF YLYNMLEGKQ EDLNALSINR VIPVVDIYEF NPWDLPPYLC 60 HRDPEQWFFF IPRKESEARG ERPKRLTDTG APNGRKTEWK MNEYKAFEGQ VSSDSAANSE 120 QLPTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-15 | 4 | 108 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-15 | 4 | 108 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-15 | 4 | 108 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-15 | 4 | 108 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-15 | 4 | 108 | 17 | 144 | NAC domain-containing protein 19 |
4dul_B | 2e-15 | 4 | 108 | 17 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022766085.1 | 3e-57 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-33 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2P5WED9 | 1e-60 | A0A2P5WED9_GOSBA; Uncharacterized protein | ||||
STRING | EOY08332 | 4e-56 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10159 | 10 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-36 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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