PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_40901_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 243aa MW: 25009.7 Da PI: 7.2669

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_40901_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2.1e-38	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprCdst tkfCyynny+lsqPryfCk+CrryWt+GG+lrnvPvGgg+rk+ k+s Cotton_A_40901_BGI-A2_v1.0 26 TEPLPCPRCDSTSTKFCYYNNYNLSQPRYFCKSCRRYWTQGGTLRNVPVGGGTRKSSKRS 85 57899**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	27	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.4E-33	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.18	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MPADSGDRRP VRAPGTMGSH PPAKLTEPLP CPRCDSTSTK FCYYNNYNLS QPRYFCKSCR 60 RYWTQGGTLR NVPVGGGTRK SSKRSRSSSS LLSPSVATSS SSSVTHEAES VHMAVNPVSV 120 LPGTGVKPEV GLADVNLNDT VDLPVSGGFT SFLNSQGEGY LTLGGYGLGT GSGFDGVWGY 180 PGNGYLGVYN GGDGDEPADA VAGATGCNIW QATGNVEGGG GLVDGDCFGW PGLAISAPGK 240 GLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605045.1	1e-176	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A1U8HI15	1e-174	A0A1U8HI15_GOSHI; dof zinc finger protein DOF1.6-like
STRING	Gorai.005G105200.1	1e-133	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9465	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	2e-37	Dof family protein