PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_40437_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 179aa MW: 19594.2 Da PI: 10.3827 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.9 | 3.6e-32 | 94 | 151 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs+fpr+YY+C+s gCp++k+ver+ +dp+++++tYegeH+h+ Cotton_A_40437_BGI-A2_v1.0 94 DEYSWRKYGQKPIKGSPFPRGYYKCSSVrGCPARKHVERAPDDPSMLIVTYEGEHRHT 151 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.1E-18 | 41 | 90 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-33 | 81 | 153 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.009 | 87 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-27 | 90 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-38 | 92 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-27 | 94 | 150 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSSAITGDGS VSNGKQGSSL FLAPALAVST GKPPLSSTPF KKRCHEHDHS DNVSSKISGS 60 GNSKCHCSKR RKNRVKKVIR VPAISSKIAD IPPDEYSWRK YGQKPIKGSP FPRGYYKCSS 120 VRGCPARKHV ERAPDDPSML IVTYEGEHRH TQPAMQENMA PAAGMDWSSS QRDNKQISI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-23 | 80 | 153 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ828074 | 0.0 | HQ828074.1 Gossypium hirsutum WRKY11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016683198.1 | 1e-126 | PREDICTED: probable WRKY transcription factor 17 | ||||
Refseq | XP_016753275.1 | 1e-126 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SJA8 | 2e-84 | WRK17_ARATH; Probable WRKY transcription factor 17 | ||||
TrEMBL | M9MUX6 | 1e-128 | M9MUX6_GOSHI; WRKY11 | ||||
STRING | Gorai.010G121800.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24570.1 | 3e-78 | WRKY DNA-binding protein 17 |
Publications ? help Back to Top | |||
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