PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40350_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 172aa    MW: 19113.3 Da    PI: 9.9942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40350_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-172271255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Cotton_A_40350_BGI-A2_v1.0 22 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 71
                                59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-302280IPR001471AP2/ERF domain
PROSITE profilePS5103221.972279IPR001471AP2/ERF domain
SMARTSM003804.2E-372285IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-212380IPR016177DNA-binding domain
PRINTSPR003672.6E-112334IPR001471AP2/ERF domain
CDDcd000182.44E-252381No hitNo description
PfamPF008476.2E-112371IPR001471AP2/ERF domain
PRINTSPR003672.6E-116181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MENGTGVVAS RESSRKPTAE RPYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSTPVAAAR  60
AYDTAVFYLR GPSARLNFPD LLAGERVGSA GGGSLGGDLS AASIRKKAIE VGARVDALEA  120
AHHHHHHHNH RGHNYNHGYD EELKPSTGGF LHRVDLNKMP DPEDSDGEWE RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142379663ATERF1
3gcc_A2e-142379663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272001e-118HQ527200.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GAGF5 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720889.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_016720897.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_016720907.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_016720915.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_016720923.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_016720930.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_017635057.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_017635058.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotO221741e-62ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A1U8M2951e-122A0A1U8M295_GOSHI; ethylene-responsive transcription factor RAP2-10-like
STRINGGorai.008G077900.12e-92(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.13e-51DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]