PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40342_BGI-A2_v1.0
Common NameF383_31355
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 266aa    MW: 29201.1 Da    PI: 4.0651
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40342_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.3e-061757437
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........H 37
                                ++C+ ++    +l+C++++ +lC+dC   +H g        H
  Cotton_A_40342_BGI-A2_v1.0 17 HTCDSCQATACTLYCHTDSAYLCHDCDKRIH-GdnttalshH 57
                                58******99*********************.5466777745 PP
2zf-B_box16.91.3e-055888232
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClle 32
                                + ++C+ +e  ++   C  +   lC +C  +
  Cotton_A_40342_BGI-A2_v1.0 58 RVWICDACEAAPAAVTCSADAASLCIECDIQ 88
                                5789************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.181855IPR000315B-box-type zinc finger
CDDcd000214.11E-71961No hitNo description
PROSITE profilePS501199.4281961IPR000315B-box-type zinc finger
PROSITE profilePS501199.21457104IPR000315B-box-type zinc finger
SMARTSM003361.3E-857104IPR000315B-box-type zinc finger
CDDcd000211.23E-560104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLKVSSGEDG YLNNWIHTCD SCQATACTLY CHTDSAYLCH DCDKRIHGDN TTALSHHRVW  60
ICDACEAAPA AVTCSADAAS LCIECDIQVL SVNPLASRHT RVPIPPITGQ ICSSSNVQQD  120
DQLPGTMFDT KNEIAALTME LNLEIDEDET DSWLLLEPGN TDNQTMSGFT YGEQLDEYVD  180
VVDTCTESFG PEQSSDQQQL VCVNCPEDSG SDSVVPVQTP RSKNQPLQEE TQLQKQQLHS  240
TYFNSEQSGS KAAFTNYPSS SLRVRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2017100.0KM201710.1 Gossypium herbaceum subsp. africanum CONSTANS-like 2 protein gene, complete cds.
GenBankKM2017300.0KM201730.1 Gossypium hirsutum subsp. latifolium CONSTANS-like 2 protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641102.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like isoform X2
TrEMBLA0A0B0PGY20.0A0A0B0PGY2_GOSAR; Zinc finger CONSTANS-LIKE 2-like protein
STRINGGorai.003G104600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1921777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-46CONSTANS-like 2