PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_40208_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 740aa MW: 80779.8 Da PI: 5.9796 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.8 | 5.6e-25 | 150 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +g Cotton_A_40208_BGI-A2_v1.0 150 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGSEWRFRHIYRGQPRRHLLTSGWSAFVNKKKLVSG 231 99****************************963.3445679****************************************** PP -EEEEEE-SSSEE..EEEEE-S CS B3 78 DfvvFkldgrsefelvvkvfrk 99 D v+F + +++el+++++r+ Cotton_A_40208_BGI-A2_v1.0 232 DAVLFL--RGEGGELRLGIRRA 251 ******..4499*******996 PP | |||||||
2 | Auxin_resp | 114 | 1.4e-37 | 276 | 357 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++ha+s+ksvF+++YnPras+s+F+++v+k+ k l+ ++s+GmRfkm+fe ed++err sG+++g+sd++pv+Wp+SkWr+L Cotton_A_40208_BGI-A2_v1.0 276 VVHAISMKSVFSIYYNPRASSSDFIIPVHKFWKCLDPSFSIGMRFKMQFEAEDAAERRHSGVITGISDINPVQWPGSKWRCL 357 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.89E-41 | 143 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-40 | 145 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.77E-23 | 148 | 250 | No hit | No description |
SMART | SM01019 | 2.0E-23 | 150 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.535 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-23 | 150 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.2E-33 | 276 | 357 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MGGLIDLNST EDDETPLSGS LSPSSSSASV LSAPGSGSSV CLELWHACAG PLISLPKRGN 60 VVVYFPQGHL EQVSDFSGVA AAYDLPPHVF CLVVDVKLHA EGATDEVYAQ VSLVPETEQS 120 EQKLEGGKTE ADGEEEDTET NIKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD 180 YNQQRPSQEL VAKDLHGSEW RFRHIYRGQP RRHLLTSGWS AFVNKKKLVS GDAVLFLRGE 240 GGELRLGIRR AAQIKDGSSF PSSCSQQLNC SNFADVVHAI SMKSVFSIYY NPRASSSDFI 300 IPVHKFWKCL DPSFSIGMRF KMQFEAEDAA ERRHSGVITG ISDINPVQWP GSKWRCLMVR 360 WDDIDANRHS RVSPWEIEPS GSVSGSNSLI SPGSKRNRVG FPSGNSEFMV PDGIRASDFG 420 ESLWSQVLQV QENLGFNSLY DGSDSPNMHW SEIRRCIPGS IGSDFSAIGN IGRDSLVSPD 480 ISRKSVGFGE SFRFHKVLQG QEIFVSPPYR NGSTADETQE NDAFGLADVG QLSGTRSGWS 540 SLMQRYNTHS RTRPSAPSTQ TSSPSSVLTF LQVSNPILNF SPIYNSNNQK REQGVNKQSS 600 FHAPEIYKGK LFPSSSSEHD SRARDLGSTD LFGHSIGSVQ LGFAPPLAAQ PVFRTSQELD 660 SSCKSSCRLF GFSLTEGRHD ASKEEDVVQA TSSLAPGAIL PCVREEFHPK PSSVTDTVGS 720 NYTEVSNLYA VRDMVLDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-118 | 39 | 386 | 18 | 361 | Auxin response factor 1 |
4ldy_B | 1e-118 | 39 | 386 | 18 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643163.1 | 0.0 | PREDICTED: auxin response factor 3-like isoform X1 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A0D2STN2 | 0.0 | A0A0D2STN2_GOSRA; Auxin response factor | ||||
STRING | Gorai.010G157400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4924 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-178 | ARF family protein |