PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40150_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 374aa    MW: 42785 Da    PI: 8.9666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40150_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.3e-4921263128
                         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                 pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWka
  Cotton_A_40150_BGI-A2_v1.0   2 PGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKA 83 
                                 9***************************.89***************8778899****************************** PP

                         NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 tg d+ +  ++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Cotton_A_40150_BGI-A2_v1.0  84 TGADRMIRGENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 126
                                 *****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.4981147IPR003441NAC domain
PfamPF023655.2E-252126IPR003441NAC domain
SuperFamilySSF1019412.22E-552147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPGFRFHPTE EELVEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWFFYV  60
PRDRKYRNGD RPNRVTTSGY WKATGADRMI RGENSRSIGL KKTLVFYSGK APKGIRTSWI  120
MNEYRLPHHE TERYQKAEIS LCRVYKRPGV EDHPSLPRCL PTRRSAESSR GQQSEKKYPQ  180
EAAQQAMERF QAFGGGQPQQ MEIEKLTETD GSSSTSTSDV TTALGLSKQN LYRPMPPIST  240
TPGLPSGMEG EGMFLNQSKQ GCCSLLPNST TLFPVGSSSV PSNVVDDLHR LVSYQQVALN  300
QQQYYNTNHP HPHQQQHQPQ SEFSTLPPQS QAQPQQLSLN VLPSALPSPT AFSDRLWEWN  360
PIPEPNREYN NPFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-54214719165NO APICAL MERISTEM PROTEIN
1ut4_B4e-54214719165NO APICAL MERISTEM PROTEIN
1ut7_A4e-54214719165NO APICAL MERISTEM PROTEIN
1ut7_B4e-54214719165NO APICAL MERISTEM PROTEIN
4dul_A4e-54214719165NAC domain-containing protein 19
4dul_B4e-54214719165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8471950.0KC847195.1 Gossypium hirsutum NAC domain protein NAC18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678255.10.0PREDICTED: NAC domain-containing protein 72-like
RefseqXP_017644131.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ9ZVP81e-122NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A1U8IJI20.0A0A1U8IJI2_GOSHI; NAC domain-containing protein 72-like
STRINGGorai.011G090000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-118NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]