PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_40144_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 18937.1 Da PI: 8.0561 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.1 | 6.1e-10 | 69 | 102 | 26 | 55 |
AP2 26 g...kr.krfslgkfgtaeeAakaaiaarkkleg 55 k+ +r +lg+f+taeeAa a+++a+ l+g Cotton_A_40144_BGI-A2_v1.0 69 HllpKNrTRLWLGTFDTAEEAALAYDKAAYMLRG 102 36665669*********************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.576 | 46 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-8 | 67 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-16 | 72 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-16 | 72 | 112 | No hit | No description |
SuperFamily | SSF54171 | 6.28E-12 | 73 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-6 | 75 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MYNSSGNSVF SDSSREELMK ALEPFMKSSS STFPLSSSSS SPSSCSYSQL TPSQPYMDPE 60 FCSPSSSNHL LPKNRTRLWL GTFDTAEEAA LAYDKAAYML RGDFARLSFP HLKHQGAHVS 120 GEFGGFKPLY SFVDAKLQAV CQSLQKQENS AKTSYVFNSK PKVEFDYSVK S |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527094 | 4e-75 | HQ527094.1 Gossypium herbaceum clone NBRI_A_EYI1BW401BBBAS simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437484.1 | 4e-59 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
TrEMBL | A0A2P5WDE2 | 1e-63 | A0A2P5WDE2_GOSBA; Uncharacterized protein | ||||
STRING | EOX92151 | 9e-51 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35993 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-29 | related to AP2 4 |