PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_40126_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 39603 Da PI: 6.1752 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 161 | 210 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae Aa+a+++a+++++g Cotton_A_40126_BGI-A2_v1.0 161 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRG 210 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-36 | 161 | 224 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 161 | 219 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-14 | 161 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 161 | 219 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.712 | 161 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-12 | 162 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-15 | 169 | 220 | No hit | No description |
PRINTS | PR00367 | 8.7E-12 | 184 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MCEIVKKVAN KKEKAFVENS RGGVYQKQHN QWSFMYQPMM TEEAMLLPEV SREREMSAMV 60 SALTHVLAGD IPEELPPDDN LDGFDSTTVV DNNSFTTSSS GFGGKKRERE EQEEGDGVMA 120 VEGLGPFSAD VRVLEGNNPA KLIPLYEYKS NEKYREEPRR RYRGVRQRPW GKWAAEIRDP 180 FKAARVWLGT FDTAEAAARA YDEAALRFRG NKAKLNFPEN VKLISLPPPP PLAINPTTTH 240 FPISDSPNTL FSIPSSQVSG QYIDYTQFFR GSGNYFQSQS QQQQRRLIVL STSSGSSGQS 300 SSSSSTPTSY PLVFPIQTSG QNLNLGSSSA SQGGGVGDFW VHAWPSDSGD YYTSTSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-23 | 160 | 221 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588872 | 0.0 | JX588872.1 Gossypium hirsutum clone NBRI_GE23425 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644837.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
Swissprot | Q9FGF8 | 4e-36 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A1U8PNW9 | 0.0 | A0A1U8PNW9_GOSHI; ethylene-responsive transcription factor ERF110-like | ||||
STRING | Gorai.008G100500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25065 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 2e-17 | ERF family protein |
Publications ? help Back to Top | |||
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