PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_40124_BGI-A2_v1.0 | ||||||||
Common Name | F383_11244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 760aa MW: 82993 Da PI: 6.1115 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.2e-19 | 95 | 150 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e++F+++++p+ ++r+eL + lgL+ qVk+WFqN+R+++k Cotton_A_40124_BGI-A2_v1.0 95 KKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELGRVLGLEPLQVKFWFQNKRTQMK 150 688999***********************************************999 PP | |||||||
2 | START | 209.5 | 1.2e-65 | 278 | 498 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 ela +a++elv++a+ +ep+W++s + n++e++++f+++ + ++ ea++++ vv+m++ l e+l+d+ qW++ Cotton_A_40124_BGI-A2_v1.0 278 ELAVAAMEELVRLAQMGEPLWMTSLdgstTVFNEEEYIRTFPRGIGpkptgFKCEASKETCVVIMNHISLIEILMDVQ-QWST 359 57899********************88888889**********999********************************.**** PP T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS START 75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146 + ka+tl+v+s+g galq+m+ae+q++splvp R++++vRy++ + +g+w++vdvS+d+ +++p +R++ Cotton_A_40124_BGI-A2_v1.0 360 VFSaivsKASTLDVLSTGiagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKHHAEGTWAVVDVSLDNIRPNPA----MRCR 438 **************************************************************************5....**** PP ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++pSg+li++++ng+skvtw+ehv++++r +h+l+++lv+sg+a+gak+w atl+rqce+ Cotton_A_40124_BGI-A2_v1.0 439 RRPSGCLIQEMPNGYSKVTWIEHVEVEDRGVHNLYKQLVSSGRAFGAKRWIATLDRQCER 498 **********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 77 | 150 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.26E-18 | 83 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.196 | 92 | 152 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-18 | 93 | 156 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.2E-17 | 95 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.59E-17 | 95 | 153 | No hit | No description |
PROSITE profile | PS50848 | 44.353 | 269 | 501 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.3E-34 | 270 | 500 | No hit | No description |
CDD | cd08875 | 1.37E-124 | 273 | 497 | No hit | No description |
SMART | SM00234 | 7.2E-59 | 278 | 498 | IPR002913 | START domain |
Pfam | PF01852 | 6.6E-55 | 279 | 498 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 6.7E-5 | 374 | 466 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.42E-24 | 518 | 752 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence Send to blast |
MPAGVMVPAR NMPSMISGNG NIGAFGTISG LSLGQQPNNN MMEGQLHPFE MTQNTSESEI 60 ARMRDEEFDS ALKSGSENHE GVSGEDDQDP RPNKKKRYHR HTQHQIQQME AFFKECPHPD 120 DKQRKELGRV LGLEPLQVKF WFQNKRTQMK TQHERQENSQ LRAENEKLRA DNMRYREALS 180 TASCPNCGGP TAVGQMSFDE HHLRLENARL REEIDRISAI AAKYVGKPVV SYPLLSSPMT 240 PRPLDFGSQT GSGEMYGTGE LLRSINAPAE ADKPMIIELA VAAMEELVRL AQMGEPLWMT 300 SLDGSTTVFN EEEYIRTFPR GIGPKPTGFK CEASKETCVV IMNHISLIEI LMDVQQWSTV 360 FSAIVSKAST LDVLSTGIAG NYNGALQVMT AEFQVPSPLV PTRESYYVRY CKHHAEGTWA 420 VVDVSLDNIR PNPAMRCRRR PSGCLIQEMP NGYSKVTWIE HVEVEDRGVH NLYKQLVSSG 480 RAFGAKRWIA TLDRQCERLA SLMATNIPTG DAGVITNQDG RKSMLKLAER MVISFCAGVG 540 ASTAHTWTTL SGTGADDVRV MTRKSVDDPG RPPGIVLSAA TSFWLPVSPK RVFDFLRDEN 600 SRNEWDILSN GGVVQEMAHI ANGRDTGNCV SLLRVNSANS SQTNMLILQE SCTDPTASFV 660 IYAPVDIVAM NVVLNGGDPD YVALLPSGFA ILPDGSSGSS GSGVADAGGS SGGSLLTVAF 720 QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLTCENA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616160.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A0B0Q126 | 0.0 | A0A0B0Q126_GOSAR; Homeobox-leucine zipper protein HDG2 | ||||
STRING | Gorai.008G172800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |