PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_40101_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10153.7 Da PI: 9.7539 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 8.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l +++++G+g+W+t + g+ R+ k+c++rw +yl Cotton_A_40101_BGI-A2_v1.0 14 KGSWTPEEDIVLTSYIQEHGPGNWRTLPTNTGLLRCSKSCRLRWPNYL 61 799*****************************99**********9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.169 | 9 | 65 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-19 | 12 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.78E-20 | 15 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.99E-9 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 61 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MGRPSCCYKV GVNKGSWTPE EDIVLTSYIQ EHGPGNWRTL PTNTGLLRCS KSCRLRWPNY 60 LRPGIRRGNF TEHEEKMIIH LQALLANR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017608949.1 | 4e-61 | PREDICTED: myb-related protein 306-like isoform X1 | ||||
Swissprot | P81392 | 2e-53 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A1Q3AR09 | 2e-52 | A0A1Q3AR09_CEPFO; Myb_DNA-binding domain-containing protein | ||||
STRING | XP_009369299.1 | 1e-52 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 2e-53 | myb domain protein 94 |
Publications ? help Back to Top | |||
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