PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_39979_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 355aa MW: 40002.5 Da PI: 5.4266 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.5 | 3.2e-29 | 130 | 190 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp+++e+tY+g+H++ Cotton_A_39979_BGI-A2_v1.0 130 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTLFEVTYRGTHTCA 190 8***************************98899**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-29 | 123 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-26 | 128 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-40 | 129 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.251 | 130 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-27 | 130 | 189 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MENMWKWEQG TLVSELIQGM QLAKQLRLHL GASSSSVESR DLLLQKILSS YEKALLILKL 60 SRPTEQPQQN VGGITCVPES PLTINGSPRS DDLEKDNQDI RDVSKKRKIM PRWTDQVRVS 120 SENLLEGPHD DGYSWRKYGQ KDILGAKYPR SYYRCTYRNT QNCWATKQVQ RSDEDPTLFE 180 VTYRGTHTCA NGNHAVPSPE KQHKSNTNGL NNTNYQPLQS QDVLSEFRAG LRVNIEGLDN 240 KEMAPPFSFA STSFGCIKSE NHSFSPSGVL DYNNIFGSFS SPFMSPDTPE LNYFSISQMN 300 NFQGVLNTQH SKSDLTELVS ANASATNSPI MDLDFSLDQV ELDPNFPFDT PGFFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-19 | 130 | 189 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ183063 | 0.0 | KJ183063.1 Gossypium hirsutum WRKY transcription factor 41 (WRKY41) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017626977.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | A0A0U1XEA0 | 0.0 | A0A0U1XEA0_GOSHI; WRKY transcription factor 27a | ||||
STRING | Gorai.004G134600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 5e-75 | WRKY family protein |